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Sign upUnknown SSL protocol error in connections with RCurl under Windows #208
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tsufz
added
the
bug
label
Oct 8, 2018
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I suggest to replace the RCurl routines with
Attaching package: ‘httr’ The following object is masked from ‘package:curl’:
[1] "InChIKey=LFTLOKWAGJYHHR-UHFFFAOYSA-N" |
tsufz
changed the title from
Unknown SSL protocol error in connection with RCurl under Windows
to
Unknown SSL protocol error in connections with RCurl under Windows
Oct 8, 2018
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sneumann
referenced this issue
Oct 22, 2018
Closed
Build error due to "Error in fromJSON(data) : no data to parse" #209
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meowcat
commented
Oct 24, 2018
@tsufz thanks for the work, I have provisionally added the workaround (slightly adapted) in 0c82f3b. It is building successfully on Windows. I am waiting for a successful Bioc build in order to close the issue. RCurl should probably be removed completely at this point; up to now it's only a minimal workaround. |
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meowcat
commented
Oct 29, 2018
Building on Bioconductor. |
meowcat
closed this
Oct 29, 2018
schymane
reopened this
Nov 14, 2018
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It might be building on BioC but I am only getting NAs for all our test data and everything else?
|
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OK our bad ... fresh install of BioC for Loulou didn't pull the latest RMB for some reason ... httr cactus is working... |
schymane
closed this
Nov 14, 2018
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Hi, remember that BioC/RMB package versions are tied to the R version. |
tsufz commentedOct 8, 2018
•
edited
RCurl derives an unknown SSL protocol error during queries with Cactus
library(RCurl)
Loading required package: bitops
getURLContent("https://cactus.nci.nih.gov/chemical/structure/7529-22-8/stdinchikey")
error in function (type, msg, asError = TRUE) :
Unknown SSL protocol error in connection to cactus.nci.nih.gov:443
sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252
[4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RCurl_1.95-4.11 bitops_1.0-6 httr_1.3.1 curl_3.2 BiocInstaller_1.30.0
loaded via a namespace (and not attached):
[1] compiler_3.5.1 R6_2.3.0 tools_3.5.1 yaml_2.2.0