Skip to content
Permalink
Branch: master
Find file Copy path
Find file Copy path
Fetching contributors…
Cannot retrieve contributors at this time
50 lines (46 sloc) 1.89 KB
#+ summary: Tissues in which a given protein is highly expressed
#+ endpoint: https://api.nextprot.org/sparql
#+ tags:
#+ - nextprot
#+ method: GET
#+ pagination: 50
#+ defaults:
#+ - entry: http://nextprot.org/rdf/entry/NX_O96000
PREFIX : <http://nextprot.org/rdf#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX up: <http://purl.uniprot.org/core/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX entry: <http://nextprot.org/rdf/entry/>
PREFIX isoform: <http://nextprot.org/rdf/isoform/>
PREFIX annotation: <http://nextprot.org/rdf/annotation/>
PREFIX evidence: <http://nextprot.org/rdf/evidence/>
PREFIX xref: <http://nextprot.org/rdf/xref/>
PREFIX publication: <http://nextprot.org/rdf/publication/>
PREFIX identifier: <http://nextprot.org/rdf/identifier/>
PREFIX cv: <http://nextprot.org/rdf/terminology/>
PREFIX gene: <http://nextprot.org/rdf/gene/>
PREFIX source: <http://nextprot.org/rdf/source/>
PREFIX db: <http://nextprot.org/rdf/db/>
PREFIX context: <http://nextprot.org/rdf/context/>
PREFIX interaction: <http://nextprot.org/rdf/interaction/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX uniprot: <http://purl.uniprot.org/uniprot/>
PREFIX unipage: <http://www.uniprot.org/uniprot/>
PREFIX proteoform: <http://nextprot.org/rdf/proteoform/>
PREFIX chebi: <http://purl.obolibrary.org/obo/>
PREFIX drugbankdrugs: <http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/>
#Tissues in which a given protein is highly expressed
select distinct ?tissue ?tisslab where {
?_entry_iri :isoform ?iso.
# get all expression
?iso :expression ?e1.
# highly expressed
?e1 :evidence/:expressionLevel :High.
?e1 :term ?tissue .
?tissue rdfs:label ?tisslab .
# Filter out cells
filter not exists {?tissue :childOf cv:TS-2035}
}
You can’t perform that action at this time.