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#+ summary: Tissues in which a given protein is highly expressed | |
#+ endpoint: https://api.nextprot.org/sparql | |
#+ tags: | |
#+ - nextprot | |
#+ method: GET | |
#+ pagination: 50 | |
#+ defaults: | |
#+ - entry: http://nextprot.org/rdf/entry/NX_O96000 | |
PREFIX : <http://nextprot.org/rdf#> | |
PREFIX owl: <http://www.w3.org/2002/07/owl#> | |
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | |
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> | |
PREFIX dc: <http://purl.org/dc/elements/1.1/> | |
PREFIX up: <http://purl.uniprot.org/core/> | |
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> | |
PREFIX entry: <http://nextprot.org/rdf/entry/> | |
PREFIX isoform: <http://nextprot.org/rdf/isoform/> | |
PREFIX annotation: <http://nextprot.org/rdf/annotation/> | |
PREFIX evidence: <http://nextprot.org/rdf/evidence/> | |
PREFIX xref: <http://nextprot.org/rdf/xref/> | |
PREFIX publication: <http://nextprot.org/rdf/publication/> | |
PREFIX identifier: <http://nextprot.org/rdf/identifier/> | |
PREFIX cv: <http://nextprot.org/rdf/terminology/> | |
PREFIX gene: <http://nextprot.org/rdf/gene/> | |
PREFIX source: <http://nextprot.org/rdf/source/> | |
PREFIX db: <http://nextprot.org/rdf/db/> | |
PREFIX context: <http://nextprot.org/rdf/context/> | |
PREFIX interaction: <http://nextprot.org/rdf/interaction/> | |
PREFIX skos: <http://www.w3.org/2004/02/skos/core#> | |
PREFIX uniprot: <http://purl.uniprot.org/uniprot/> | |
PREFIX unipage: <http://www.uniprot.org/uniprot/> | |
PREFIX proteoform: <http://nextprot.org/rdf/proteoform/> | |
PREFIX chebi: <http://purl.obolibrary.org/obo/> | |
PREFIX drugbankdrugs: <http://wifo5-04.informatik.uni-mannheim.de/drugbank/resource/drugs/> | |
#Tissues in which a given protein is highly expressed | |
select distinct ?tissue ?tisslab where { | |
?_entry_iri :isoform ?iso. | |
# get all expression | |
?iso :expression ?e1. | |
# highly expressed | |
?e1 :evidence/:expressionLevel :High. | |
?e1 :term ?tissue . | |
?tissue rdfs:label ?tisslab . | |
# Filter out cells | |
filter not exists {?tissue :childOf cv:TS-2035} | |
} |