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[PRE REVIEW]: memr: An R package for medical free-text records embedding and visualization #2273

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whedon opened this issue May 29, 2020 · 6 comments

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@whedon
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@whedon whedon commented May 29, 2020

Submitting author: @adamgdobrakowski (Adam Dobrakowski)
Repository: https://github.com/MI2DataLab/memr
Version: v0.1.0
Editor: Pending
Reviewer: Pending
Managing EiC: Daniel S. Katz

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

Author instructions

Thanks for submitting your paper to JOSS @adamgdobrakowski. Currently, there isn't an JOSS editor assigned to your paper.

@adamgdobrakowski if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JOSS and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JOSS submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands
@whedon whedon added the pre-review label May 29, 2020
@whedon
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@whedon whedon commented May 29, 2020

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf
@whedon
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@whedon whedon commented May 29, 2020

Reference check summary:

OK DOIs

- None

MISSING DOIs

- https://doi.org/10.3115/v1/d14-1162 may be missing for title: Glove: Global vectors for word representation

INVALID DOIs

- None
@whedon
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@whedon whedon commented May 29, 2020

@danielskatz
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@danielskatz danielskatz commented May 29, 2020

@whedon check repository

@whedon
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@whedon whedon commented May 29, 2020

Software report (experimental):

github.com/AlDanial/cloc v 1.84  T=0.12 s (409.8 files/s, 76494.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                            26           1310            313           4388
R                               11            117            586            919
Markdown                         3             95              0            372
CSS                              2             73             35            296
JavaScript                       2             41             16            141
Rmd                              1             41            103             47
TeX                              1              5              0             45
SVG                              1              0              1             11
YAML                             1              1              0              4
-------------------------------------------------------------------------------
SUM:                            48           1683           1054           6223
-------------------------------------------------------------------------------


Statistical information for the repository '2273' was gathered on 2020/05/29.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Adam Gabriel Dobrako             1           198              0          100.00

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Adam Gabriel Dobrako        198          100.0          0.0                8.08
@whedon whedon added R TeX labels May 29, 2020
@danielskatz
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@danielskatz danielskatz commented May 29, 2020

👋 @adamgdobrakowski - Thanks for your submission to JOSS. As described in our blog post announcing the reopening of JOSS, we're currently working in a "reduced service mode", limiting the number of papers assigned to any individual editor.

Since reopening JOSS last week, we've had > 60 papers submitted and as such, yours has been put in our backlog that we will be working through over the coming weeks and months.

Thanks in advance for your patience!

(In the meantime, feel free to make any needed fixes to the paper, such as adding the possibly missing DOI, etc. - add @whedon generate pdf as a new comment in this thread to build the pdf)

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