Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

⚠️ JOSS reduced service mode ⚠️

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

Reference check summary:

OK DOIs

- 10.1016/j.cell.2019.05.031 is OK
- 10.1016/j.cell.2018.05.035 is OK
- 10.1038/nmeth.3252 is OK
- 10.1186/s13059-017-1382-0 is OK
- 10.1073/pnas.1612826113 is OK
- 10.1038/nmeth.2563 is OK
- 10.1038/s41592-018-0175-z is OK
- 10.1093/nar/gkx1206 is OK
- 10.1126/science.aat5691 is OK
- 10.5281/zenodo.59499 is OK
- 10.7717/peerj.453 is OK
- 10.5281/zenodo.3710410 is OK

MISSING DOIs

- None

INVALID DOIs

- None

👉 Check article proof 📄 👈

Software report (experimental):

github.com/AlDanial/cloc v 1.84  T=1.31 s (326.3 files/s, 36054.0 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                         313           6449          11727          19840
JSON                            38              0              0           1495
reStructuredText                48            811            741           1400
Jupyter Notebook                 9              0           2287            886
Markdown                         7             94              0            647
make                             4             77             89            259
TeX                              1             14              0            212
YAML                             4              1              7            156
CSS                              1             13             10             70
HTML                             2              4              0             48
Dockerfile                       1              6             41             10
Bourne Shell                     1              0              0              1
-------------------------------------------------------------------------------
SUM:                           429           7469          14902          25024
-------------------------------------------------------------------------------


Statistical information for the repository '2406' was gathered on 2020/06/29.
The following historical commit information, by author, was found:

Author                     Commits    Insertions      Deletions    % of changes
Ambrose J Carr                 146         29434          19041           20.04
Ambrose J. Carr                 34          5003           2089            2.93
Chris Roat                       1            17             24            0.02
Deep Ganguli                   113          4915           2875            3.22
Josh Moore                      26          5022            963            2.47
Justin Kiggins                   9          2568           2428            2.07
Kira Evans                       5           919            866            0.74
Marcus Kinsella                  7           140            133            0.11
MikeDMorgan                      1            47              1            0.02
Nicholas                         1             2              2            0.00
Nicholas Mei                     3           251              8            0.11
Nicholas Sofroniew               1             3              3            0.00
Olga Botvinnik                   2            25             24            0.02
Shannon Axelrod                 41         10438          12534            9.50
Tony Tung                      548         67412          54656           50.47
freeman-lab                      7           656            204            0.36
kevinyamauchi                   16           990            120            0.46
mattcai                         19          7293           3773            4.58
shanaxel42                      53          4803           2181            2.89
xchang1                          1             3              1            0.00

Below are the number of rows from each author that have survived and are still
intact in the current revision:

Author                     Rows      Stability          Age       % in comments
Ambrose J Carr             7407           25.2         17.5               18.01
Ambrose J. Carr             744           14.9         23.2                8.60
Chris Roat                   17          100.0          9.5                0.00
Deep Ganguli               1215           24.7         17.4               28.31
Josh Moore                 3866           77.0         16.3               11.92
Justin Kiggins              211            8.2          5.7               47.39
Kira Evans                  163           17.7         11.4                1.84
Marcus Kinsella               7            5.0         33.5                0.00
Nicholas Mei                171           68.1         12.3                4.68
Olga Botvinnik                1            4.0         24.7              100.00
Tony Tung                 13469           20.0         11.0                5.70
kevinyamauchi               627           63.3         13.9                7.50
mattcai                    3857           52.9          2.2               23.85
shanaxel42                 6257          130.3         10.5                8.65
sofroniewn                    1          100.0          8.3                0.00
xchang1                       3          100.0         19.2                0.00

👋 @neuromusic

Thanks for your submission to JOSS. As described in our blog post announcing the reopening of JOSS, we're currently working in a "reduced service mode", limiting the number of papers assigned to any individual editor.

Since reopening JOSS, we've had a very large number of papers submitted and as such, yours has been put in our backlog that we have been and will continue to work through over the coming weeks and months.

Thanks in advance for your patience!

Thanks @danielskatz 😄