Added initial data files 1

Meta-Paleo · Aug 2, 2019 · f5c030a0db92047d3619fb1fa81bc216d1cb4bd9 · f5c030a
1 parent 3790d45
commit f5c030a0db92047d3619fb1fa81bc216d1cb4bd9
diff --git a/.gitignore b/.gitignore
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+.Rproj.user
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+.Rhistory
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+.RData
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+.Ruserdata
diff --git a/README.md b/README.md
@@ -8,4 +8,27 @@ This has already been done for [dinosaurs](https://peerj.com/articles/4417/) - n
 3. What implications does this have on their diversity/extinction patterns?
 4. What is the structure of growth in terms of geography?
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-Data sources: [The Paleobiology Database](https://paleobiodb.org/#/)
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+Data sources: [Fossilworks](http://fossilworks.org/bridge.pl?user=Guest&action=displayDownloadForm)
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+Notes on data selction:
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+* Restricted to Mesozoic groups as the data are most complete
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+* Downloaded occurences from [here](http://fossilworks.org/bridge.pl?user=Guest&action=displayDownloadForm) using the 'full form' option
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+* Basic options: Set taxonomic level to species; set time span as 'Mesozoic'
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+* Included collections: Keep all default options set
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+* Included occurrences: Remove ichnofossils and form taxa; keep all other default options set
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+* Colletion fields: basic fields, check all; geography fields, check all; time fields, check all; stratigraphy fields, check all; lithology fields, check all; no taphonomy or collection methods required
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+* Occurence fields: check ocurence no, reference no, year published, taxon no, type specimen, type locality
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+Groups:
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+* Dinosauria (minus Aves)
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+* Aves
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+* Testudinata
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+* Choristodera
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+* Crocodyliformes
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+* Ichythyosauria
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+* Lepidosauromorpha
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+* Lissamphibia
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+* Mammaliaformes
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+* Pterosauria
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+* Sauropterygia
diff --git a/TetraTime.Rproj b/TetraTime.Rproj
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+Version: 1.0
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+
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+RestoreWorkspace: Default
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+SaveWorkspace: Default
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+AlwaysSaveHistory: Default
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+EnableCodeIndexing: Yes
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+UseSpacesForTab: Yes
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+NumSpacesForTab: 2
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+Encoding: UTF-8
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+RnwWeave: Sweave
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+LaTeX: pdfLaTeX
diff --git a/data/Testudinata-occs.csv b/data/Testudinata-occs.csv