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Attempting PDF compilation. Reticulating splines etc...

👉 Check article proof 📄 👈

👋 @StewMH, @mdavezac - thanks for agreeing to review this submission. Your job, as stated in the first comment in this issue, is to go through the paper and the software repository, and check off the boxes in your list as you've done so. When you find something that is a problem, if it's brief, you can mention it here, and if it's less brief or an action for the submitter, open an issue in the software repository and mention this issue in it.

If you have any questions or problems, please tell me.

Hi @tesch1,

I tried compiling this with GCC 7.3 and got this error:

In file included from /home/smh/joss/cppduals/duals/dual_eigen:389:0,
                 from /home/smh/joss/cppduals/tests/sandbox.cpp:20:
/home/smh/joss/cppduals/duals/arch/AVX/ComplexDual.h: In function ‘Packet Eigen::internal::pset1(const typename Eigen::internal::unpacket_traits<Packet>::type&) [with Packet = Eigen::internal::Packet2cdf; typename Eigen::internal::unpacket_traits<Packet>::type = std::complex<duals::dual<float> >]’:
/home/smh/joss/cppduals/duals/arch/AVX/ComplexDual.h:157:21: error: ‘_mm256_set_m128’ was not declared in this scope
   return Packet2cdf(_mm256_set_m128(v,v));
                     ^~~~~~~~~~~~~~~
/home/smh/joss/cppduals/duals/arch/AVX/ComplexDual.h:157:21: note: suggested alternative: ‘_mm256_set_epi8’
   return Packet2cdf(_mm256_set_m128(v,v));
                     ^~~~~~~~~~~~~~~
                     _mm256_set_epi8

I think you need a workaround here. See e.g. opencv/opencv#8080 for a similar issue.

I didn't have any luck compiling it with Clang on Ubuntu either, so far.

Also, it's Apache-licensed but you have MPL-licensed files:
https://gitlab.com/tesch1/cppduals/blob/master/duals/arch/AVX/Dual.h

Hi,

Thanks for reviewing!

Ah yeah, the "older gcc missing avx primitive". Just checked in an update/workaround. Does it compile for you now?

Also, did you run into the same error(s) under clang, or was there something else?

Regarding the licenses, yes, there are some files that were modified from Eigen, so retain the Eigen license. These are only included with #include <duals/dual_eigen>. An upcoming update will clarify this in the README.

@tesch1, have you considered dual licensing the non-eigen parts with MPL as well as Apache? That way, users can pick a format where the whole product is covered under a single license.

Oh yes, that's a great idea. I'll do that. I picked Apache+LLVM because libc++ uses it, and wanted to be broadly compatible with that, but dual-licensing is even better.

👋 Any news on this from the authors or reviewers?

Hi,

I have got past the missing avx primitive with GCC. Now the compilation runs for a while but fails with an ICE probably related to out-of-memory, at least on my VM. I can try a more powerful bare-metal machine, the VM only has 2G of RAM.

Cheers,
Stewart

An issue has been filed in the original repo.

@StewMH, I think I clicked on your checkboxes rather than mine at some point... I tried to undo the damage, but I do apologized if I made a mess of things 😊

@tesch1 - please let us know when you have worked on the issues in https://gitlab.com/tesch1/cppduals/issues/4

@whedon remind @tesch1 in 2 weeks

Reminder set for @tesch1 in 2 weeks

👋 @tesch1, please update us on how things are progressing here.

👋 @tesch1, please update us on how things are progressing here.

@whedon generate pdf from branch paper-3

@StewMH - did you ever get it to compile? Some Eigen constructs can be quite demanding on compiler memory, especially in newer (> 3.3.7) versions.

I've updated https://gitlab.com/tesch1/cppduals/issues/4 and merged changes into the master branch (which is currently building).

Regarding licensing, have changed everything to MPL-2 for simplicity's sake.

Attempting PDF compilation from custom branch paper-3
. Reticulating splines etc...

👉 Check article proof 📄 👈

@danielskatz It would appear that whedon does not correctly use custom branches from gitlab when generating pdfs (or I did the syntax wrong above?)

What didn't work? It looks like whedon generated a PDF. Is it not from the right branch?

It is not from the right branch.

Thanks - once the submission is accepted (hopefully in another 10 min or so), the DOI for the JOSS article will be shown here. You can certainly add this to the zenodo metadata.

@whedon generate pdf

Attempting PDF compilation. Reticulating splines etc...

👉 Check article proof 📄 👈

There seem to be some issue in a couple of bib entries - can you merge https://gitlab.com/tesch1/cppduals/merge_requests/18 which I think should fix them?

Merged

@whedon generate pdf

Attempting PDF compilation. Reticulating splines etc...

👉 Check article proof 📄 👈

@whedon accept

Attempting dry run of processing paper acceptance...

OK DOIs

- 10.1145/2503210.2503219 is OK
- 10.1007/978-1-4613-0075-5 is OK
- 10.5281/zenodo.2677671 is OK

MISSING DOIs

- None

INVALID DOIs

- None

Check final proof 👉 openjournals/joss-papers#1087

If the paper PDF and Crossref deposit XML look good in openjournals/joss-papers#1087, then you can now move forward with accepting the submission by compiling again with the flag deposit=true e.g.

@whedon accept deposit=true

@whedon accept deposit=true

Doing it live! Attempting automated processing of paper acceptance...

🐦🐦🐦 👉 Tweet for this paper 👈 🐦🐦🐦

🚨🚨🚨 THIS IS NOT A DRILL, YOU HAVE JUST ACCEPTED A PAPER INTO JOSS! 🚨🚨🚨

Here's what you must now do:

0. Check final PDF and Crossref metadata that was deposited 👉 openjournals/joss-papers#1088
1. Wait a couple of minutes to verify that the paper DOI resolves https://doi.org/10.21105/joss.01487
2. If everything looks good, then close this review issue.
3. Party like you just published a paper! 🎉🌈🦄💃👻🤘

Any issues? notify your editorial technical team...

Thanks to @StewMH and @mdavezac for reviewing!

@tesch1 - you can see the DOI above (https://doi.org/10.21105/joss.01487). It's not quite working for me yet, which could be a backlog in registering new DOIs, or it could be due to a server in my location - Once it works, I will close this issue and we will be done.

Ah, now the DOI resolves, but I don't yet see https://www.theoj.org/joss-papers/joss.01487/10.21105.joss.01487.pdf working.

Thanks to @StewMH and @mdavezac for reviewing!

I second that, Thanks gentlemen!! Also thank you, @danielskatz !

@tesch - does https://www.theoj.org/joss-papers/joss.01487/10.21105.joss.01487.pdf work for you?

@danielskatz nope, 404

@arfon, any thoughts on this?

Congrats, @tesch1! 🍾

@arfon, any thoughts on this?

Looks like there's an issue with GitHub Pages right now: https://www.githubstatus.com/incidents/42hkbtl63nmn

OK, looks like the PDF URL is resolving now.

🎉🎉🎉 Congratulations on your paper acceptance! 🎉🎉🎉

If you would like to include a link to your paper from your README use the following code snippets:

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