[PRE REVIEW]: pyGOURGS - global optimization of n-ary tree representable problems using uniform random global search #1998

whedon · 2020-01-07T15:26:50Z

Submitting author: @pySRURGS (Sohrab Towfighi)
Repository: https://github.com/pySRURGS/pyGOURGS
Version: 0.1
Editor: @arokem
Reviewer: Pending

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Thanks for submitting your paper to JOSS @pySRURGS. Currently, there isn't an JOSS editor assigned to your paper.

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Editor instructions

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whedon · 2020-01-07T15:26:54Z

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

whedon · 2020-01-07T15:27:01Z

Software report (experimental):

github.com/AlDanial/cloc v 1.84  T=0.08 s (251.9 files/s, 60095.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
HTML                             1            256              0           2817
Python                           9            207            447            832
SVG                              4              2              2            194
Markdown                         2             32              0            106
TeX                              1              5              0             65
Mako                             2              1              0             28
YAML                             1              0              1             12
Bourne Shell                     1              0              0              2
-------------------------------------------------------------------------------
SUM:                            21            503            450           4056
-------------------------------------------------------------------------------

whedon · 2020-01-07T15:27:06Z

PDF failed to compile for issue #1998 with the following error:

ORCID looks to be the wrong length
/app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon.rb:153:in block in check_orcids': Problem with ORCID (https://orcid.org/0000-0002-3050-8943) for Sohrab Towfighi (RuntimeError) from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon.rb:151:in each'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon.rb:151:in check_orcids' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon.rb:88:in initialize'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon/processor.rb:36:in new' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon/processor.rb:36:in set_paper'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/bin/whedon:55:in prepare' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:in run'
from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:in dispatch'
from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/bin/whedon:116:in <top (required)>'
from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in

'

whedon · 2020-01-07T15:27:12Z

Reference check summary:

OK DOIs

- 10.1186/s13040-018-0164-x is OK
- 10.1287/moor.6.1.19 is OK

MISSING DOIs

- https://doi.org/10.21105/joss.01675 may be missing for title: pySRURGS-a python package for symbolic regression by uniform random global search

INVALID DOIs

- None

danielskatz · 2020-01-07T15:28:17Z

👋 @arokem - would you be willing to edit this submission?

whedon · 2020-01-07T16:38:45Z

👉 Check article proof 📄 👈

danielskatz · 2020-01-09T13:21:42Z

👋 @arokem - a second ping...

arokem · 2020-01-09T15:51:49Z

Yes. I can take this one.

arokem · 2020-01-09T15:52:19Z

@whedon assign @arokem as editor

whedon · 2020-01-09T15:52:24Z

OK, the editor is @arokem

whedon · 2020-01-09T16:13:05Z

PDF failed to compile for issue #1998 with the following error:

/app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:377:in parse': (tmp/1998/papers/JOSS/paper.md): did not find expected key while parsing a block mapping at line 2 column 1 (Psych::SyntaxError) from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:377:in parse_stream'
from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:325:in parse' from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:252:in load'
from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:473:in block in load_file' from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:472:in open'
from /app/vendor/ruby-2.4.4/lib/ruby/2.4.0/psych.rb:472:in load_file' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon.rb:125:in load_yaml'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon.rb:85:in initialize' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon/processor.rb:36:in new'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/lib/whedon/processor.rb:36:in set_paper' from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/bin/whedon:55:in prepare'
from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/command.rb:27:in run' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/invocation.rb:126:in invoke_command'
from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor.rb:387:in dispatch' from /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.3/lib/thor/base.rb:466:in start'
from /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-9847f98e9ec6/bin/whedon:116:in <top (required)>' from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in load'
from /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in `

'

arokem · 2020-01-09T16:15:41Z

Hmm. Looks like I broke things in my PR (pySRURGS/pyGOURGS#1). But it wasn't working before either (the title was mis-rendered and the bibliography wasn't rendering)

pySRURGS · 2020-01-09T16:17:32Z

I'll figure this out by end of today. Please leave to me.

whedon · 2020-01-09T16:23:46Z

👉 Check article proof 📄 👈

whedon · 2020-01-09T16:25:40Z

👉 Check article proof 📄 👈

arokem · 2020-01-09T16:29:55Z

👍 In the meanwhile, could you please recommend potential reviewers for this article? There is a list of potential reviewers here, but feel free to suggest other people as well. Please do not tag these people into this issue for now, but provide their GitHub user-name (without the @ sign)

whedon · 2020-01-09T16:30:23Z

👉 Check article proof 📄 👈

pySRURGS · 2020-01-09T16:34:08Z

Consider hausen and trallard

pySRURGS · 2020-01-09T16:39:19Z

@whedon generate pdf

whedon · 2020-01-09T16:39:52Z

👉 Check article proof 📄 👈

arokem · 2020-01-10T05:08:39Z

Unfortunately, these proposed reviewers are both currently reviewing other submissions. Let me see if I can find some other appropriate reviewers in our pool.

arokem · 2020-01-10T05:10:05Z

👋 @andim: would you be willing to review this paper for JOSS?

arokem · 2020-01-10T05:10:54Z

👋 @rowanc1 : would you be willing to review this paper for JOSS?

whedon added the pre-review label Jan 7, 2020

whedon added the Python label Jan 7, 2020

whedon assigned arokem Jan 9, 2020

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[PRE REVIEW]: pyGOURGS - global optimization of n-ary tree representable problems using uniform random global search #1998

[PRE REVIEW]: pyGOURGS - global optimization of n-ary tree representable problems using uniform random global search #1998

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edited