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Sign upMetFragCLI using arguments #37
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The parameter file is the only way for now due to the complexity of options, the file I/O is not usually the big time limitation, this is rather either at the candidate retrieval stage (depending on database) or fragmentation, not inputs. |
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One way to speed up parameter file generation would be to create them |
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@MaliRemorker something to ponder - at least whether simple MetFrag settings could be passed direct to the CL at some stage? |
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Or, just any metfrag settings, by giving a template file as an argument?
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On 5 May 2020, 09:59, Emma Schymanski wrote:
[@MaliRemorker](https://github.com/MaliRemorker) something to ponder - at least whether simple MetFrag settings could be passed direct to the CL at some stage?
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Hi there,
I am trying to apply MetFragCLI to multiple spectra (> 1,000). The generation and I/O of > 1,000 parameter files may take too much time and computational resources. Could you please let me know any good way of using MetFragCLI with arguments instead of a parameter file?
Thanks.