archivesunleashed / graphpass

Co-authored-by: Nick Ruest <ruestn@gmail.com>

…#69)

* Update README to reflect changes
* Remove references to libgen in Makefile (no longer used for Mac or Linux).
* Add test suite for input-output functions.
* Remove debug flags from tests and have functions return (1) instead of exit(1).
* Use #define instead of const for Ubuntu gcc.
* Use stderr instead of stdout for error outputs.

… (#61)

* Add optional max-nodes and max-edges flags.
* Some minor clean up of flags for alpha order.

- Update license header in all src files.
- Update README
- Rename LICENSE.txt to LICENSE
- Make LICENSE consistent with other AU projects

- Update TravisCI
- Setup CodeCov config
- Update README

- Moves Docs -> doc
- Moves tests -> src/tests
- Moves headers -> src/headers
- Moves src/*.c -> src/main
- Moves unity -> vendor/unity
- Updates Doxygen config
- Update Doxygen generated docs
- Update README
- Update all src files that need to be updated to reflect re-org
- Update Makefile so project builds
- Clean-up whitespace in src files
- Simplify Makefile

…46)

* Resolves #45 
* Resolves #25 
* Add conditional on the case that max degree & min degree are equal.
* Switch to regular degree instead of log when the maximum and minimum
node sizes are equal (i.e. a complete graph).
* Add one to degree for the case where all node degrees are equal to zero.

- Roll back to XML 1.0 from 1.1 introduced in
d17b57c
- Roll back to Gexf 1.2 from 1.3 introduced in
d17b57c
- Switch line ending encoding from \n to \x0A
- Clean up whitespace in file

Remove SOMETHING.am; resolves #29.

Remove .atom-build.yml; resolves #31.

)

* Upgrade gexf output to 1.3.
* Kill graphpass on nodes > MAX_NODES (currently set to 40,000).
* Review request for using CONSTANT instead of "40k"
* Create verbose mode (-v or --verbose).
* Set MAX_NODES to 50000.
* "Less" should be "Fewer" in error message.

#16)

Fix xml_escapes for labelling (issue #15)
Give namespace for user generated variables and distinguish between constant and non-constant variables. (issue #13)

* More unit tests; remove graphpass_test.h which is no longer needed.

* Add modularity test.

* Include some basic statistical functions: mean, variance, std.
Include unit tests.
Add "idRef" to keep track of node ids from original graph to filtered graph.

* Add p-value calculation (from gpl source, attributed).

* Add method to calculate p-value from two rank-orders based on element.

* More unit tests.  Include rank-order test output to pdv.

Take FILEPATH information out of the header (only need to ingest the graph).

Exit(-1) if graphpass cannot find file.

Build infrastructure for unit testing.

Minor tweaks after working through install docs